Seq-Scope Mouse Liver Data Application

For each cell type, we first preprocess the input data

python -m ella.data.prepare_data -i your_dir/data_healthy_PC.pkl -o prepared_data

Then run ELLA across genes in parallel for each cell type with a corresponding recipe (.yaml file)

bash run_seqscope.sh

Other scripts used for mRNA characteristic analysis and for plotting are shared in the github repo.