SeqFISH+ Mouse Embryonic Fibroblast Data Application

For the fibroblast cell type, we first preprocess the input data

python -m ella.data.prepare_data -i your_dir/data_Fibroblast.pkl -o prepared_data

Then run ELLA across genes in parallel with a corresponding recipe (.yaml file)

bash run_seqfish.sh

Other scripts used for mRNA characteristic analysis and for plotting are shared in the github repo.